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Bioinformatics File Formats
15
Flashcards
0/15
.gff or .gff3
Gene Feature Format
.bam
Binary version of Sequence Alignment/Map format
.tree
Newick format for phylogenetic trees
.fastq
Nucleotide sequences with quality scores
.bed
Browser Extensible Data format
.vcf
Variant Call Format for genetic variants
.phylip
Phylogeny Inference Package format
.fasta
Nucleotide or peptide sequences
.ab1
Applied Biosystems Genetic Analysis Data format
.mmdb
Macromolecular structure
.gbk or .gb
GenBank sequence data
.pdb
Protein Data Bank - 3D structures of biological molecules
.maf
Multiple Alignment Format
.sam
Sequence Alignment/Map format
.embl
European Molecular Biology Laboratory format
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